PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G30190.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 292aa    MW: 31422.1 Da    PI: 9.5478
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G30190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM75.81e-23181438126
              NAM   8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k....kvkaeekewyfFskrdkkyatgkrknratk.sgyWkatgkdkevlsk 95 
                      hPtd+elv++yL+++v++  ++  + ++e+d+y ++P dL  k     ++ +++ wyfF++ ++k++ g+r+ ra+   g W++    k+v+  
  OGLUM01G30190.1  18 HPTDQELVTKYLRRHVDSGGNPW-RYVHEADVYAADPDDLTgKyspaVASDGSRAWYFFTTVRSKSTGGQRRARAVGvGGCWHSEAGAKDVVGG 110
                      9*******************999.88**************84366644444777********************6554999***9999999986 PP

              NAM  96 ..kgelvglkktLvfykgrapkgektdWvmhey 126
                        + + +g ++ + f +++ p+ +++ W+m e 
  OGLUM01G30190.1 111 irSPRPIGRRQFFSFVNKEGPRRVRSGWIMVEI 143
                      656777************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100533.80211165IPR003441NAC domain
SuperFamilySSF1019416.15E-3515165IPR003441NAC domain
PfamPF023652.3E-1415142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MSPSRPDEAD PAADFGSHPT DQELVTKYLR RHVDSGGNPW RYVHEADVYA ADPDDLTGKY  60
SPAVASDGSR AWYFFTTVRS KSTGGQRRAR AVGVGGCWHS EAGAKDVVGG IRSPRPIGRR  120
QFFSFVNKEG PRRVRSGWIM VEIGLKYAQQ NASSDELVLC KVYRSPRAPP AAAAANKSMA  180
APPPTATKSK TEEATPPPDD VKPVVVAAQT PDTKILRAAK EAAAAATGCK RKADVKSSGA  240
RRGKRLCSRC RAETSESDSE TAVLDRSPSI EDETADSSEI HGSSDGKFIR FL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-141516319166Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621657.10.0PREDICTED: NAC domain-containing protein 2
TrEMBLA0A0D9YD280.0A0A0D9YD28_9ORYZ; Uncharacterized protein
STRINGLOC_Os01g48446.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.26e-12NAC domain containing protein 47